Position
| Chromosome | chr1 |
| Start | 18069947 |
| End | 18088385 |
| Strand | - |
view in Gbrowse: chr1:18069947..18088385
Most similar sequence in NCBI nr database
| Accession | Description | E-value | Score |
|---|
| XP_004933191.1 | succinate dehydrogenase | 0.0 | 1352 |
ORF sequence (1932 bp)
ATGTCGAAAATCACGATGAACATTTTGACACTGAAGAACCTGTCAGCCTCCTTAATGAGAACGACTGAAAGGATCAAACTAGTTGTTCCTCATCGAAACGCCTGCGTCACGGTCCAGCACCACTGCCACGACTGCCTCATCATCGGAGCGGGGGGAGCAGGCTTGCGAACCGCCGTTGGTCTGGCGCAACAACAATTCTCGGTAGCTGTAGTGTCCAAGCTGTACCCAACGAGGTCCCACACTATCGCAGCGCAGGGCGGAATGAATGCTGCTATTGGTAGTATGCACCCGGATGATTGGCGCTGGCACTTCTATGATACTGTCAAAGGCTCGGATTGGCTAGGAGATCAGGACTCAATCCACTATCTCACGCGTGAAGCACCAAACGTGGCTATAGAATTGGAAAATATGGGTATGCCATTCTCAAGGACTAAAGATGGCAAGATCTACCAGAGGCCTTTCGGTGGAAGTACCACGCACAACGGTAAAGAAGTGGCTAAAAGGACCTGCTGTGTTGCTGATAGAACCGGTCACGCTCTCCTCCACACTCTCTACGGCTACAGCACCAAGCTGAAGAACATTGACCACTTCGCTGAATTCTTTGTGCTAGATCTTCTGATTCAAGACGGAGTTGTGGTCGGGGCGGTAGCGCTCGACATGGACGACAGCAGTATACACAGGTTTCAAGCAAAGAACACGGTGATCGCAACAGGGGGCTACCCCCGTATGTATTTCTCGTGCACAGCGGCCCACACTTGCACCGGTGATGGATGCGCCATCGCTACGAGAGCTGGTATCATGTTGCAGGACATGGAGTTTGTGCAGTTTCATCCGACAGGCATGTATGGTTCCGGTTGCCTGATGACGGAGGGCTGTCGTGGAGAAGGTGGCTTCCTCGTAAACAGCAAGGGCGAGAGGTTTATGGAGAAGTACGCCCCAAAAGCCAAGGATCTGGCCAGTAGAGATGTAGTCTCTAGATCGATTGCTACCGAGATACGAGAAGGGCGTGGAATAGGACCGAATAAGGACTACGTTCACCTTCAGCTGCACCATTTGAAGCCGGAAGTAATCAAGGAGAGGCTGCCCGGTATTTCGGAGACGGCTTGGACATTCACCGGAGTGGACGTCTACACACAGCCTCTACCGGTCTTGCCGACGGTTCATTATACGATGGGCGGCATCCCAATCAATTACAAGGGAGAGGTTGTGATTCACGAAAACAATAAGGATTGCCCGGTGCCGGGACTGCATGGGGCCGGGGAGGCGGTCAGCAACTGCCACGGCGCCAACCGTCTTGGAGCCAACTCCATTCTTGACATTGTGGTGTTCGGCAAGGCAATCAGCATCAACATTGCAAAGAACAGCAAGCCGGGCGATAAGCAACCAGATTTGAAAGACAATATATGCGAGGCGTCATTGGATAATCTGTTTAAAATACGAGATGCCAACGGTACCATTCCGACAGCGGAACTAAGGAACGCCATGAGAAACACGATGCAAAGCAAGTGCGCTGTCTTCAGAGAGGCCAAACTACTGGAAGAAGCTAATCAGGAGATGCTGAAGTGGTATCAGTCATTTAAAGACCTGCGTGTCACGGATCGTCGTCTCAACTGGAACAGCGATCTTGTCGAGAGCTTGGAGCTGCAGAACATGCTGCAACTGGCCATCCAGCTTACGGCCAGCGCTCACAAAAGAACTGAGAGTAGGGGCGCTCATTTCAGAGACGATTACCCTCATAGATGTGACGAAATGGACTATTCCAAGCCAGTCGAAGGCCAGACAAAGAAACCTTTCGACCAGCACTGGAGGAAACACAGTTTAACGATGCTAGACCAGGCCACCGGAAAGGTGACTATAAGCTATCGTCCAGTCATCGATACAACATTGGACGATGAAGTGAAGACAATTCCGCCTGTCCCGAGAGTTTACTGA
Protein sequence (643 aa)
MSKITMNILTLKNLSASLMRTTERIKLVVPHRNACVTVQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHPDDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGSTTHNGKEVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLDLLIQDGVVVGAVALDMDDSSIHRFQAKNTVIATGGYPRMYFSCTAAHTCTGDGCAIATRAGIMLQDMEFVQFHPTGMYGSGCLMTEGCRGEGGFLVNSKGERFMEKYAPKAKDLASRDVVSRSIATEIREGRGIGPNKDYVHLQLHHLKPEVIKERLPGISETAWTFTGVDVYTQPLPVLPTVHYTMGGIPINYKGEVVIHENNKDCPVPGLHGAGEAVSNCHGANRLGANSILDIVVFGKAISINIAKNSKPGDKQPDLKDNICEASLDNLFKIRDANGTIPTAELRNAMRNTMQSKCAVFREAKLLEEANQEMLKWYQSFKDLRVTDRRLNWNSDLVESLELQNMLQLAIQLTASAHKRTESRGAHFRDDYPHRCDEMDYSKPVEGQTKKPFDQHWRKHSLTMLDQATGKVTISYRPVIDTTLDDEVKTIPPVPRVY
Domains and motifs
| Database | ID | Description | Start | End | Evalue | InterPro ID |
|---|
| PANTHER | PTHR11632 | - |
34 | 643 | 0.0 |
- |
| PANTHER | PTHR11632:SF51 | - |
34 | 643 | 0.0 |
- |
| PIRSF | PIRSF000171 | - |
34 | 608 | 2.2e-35 |
- |
| SUPERFAMILY | SSF51905 | - |
38 | 468 | 2.3e-71 |
IPR036188 |
| TIGRFAM | TIGR01816 | sdhA_forward: succinate dehydrogenase, flavoprotein subunit |
42 | 643 | 0.0 |
IPR011281 |
| Gene3D | 3.50.50.60 | - |
44 | 446 | 0.0 |
IPR036188 |
| Pfam | PF00890 | FAD binding domain |
44 | 437 | 6.7e-115 |
IPR003953 |
| TIGRFAM | TIGR01812 | sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit |
44 | 628 | 0.0 |
IPR014006 |
| ProSitePatterns | PS00504 | Fumarate reductase / succinate dehydrogenase FAD-binding site. |
78 | 87 | - |
IPR003952 |
| SUPERFAMILY | SSF56425 | - |
271 | 390 | 7.0e-43 |
IPR027477 |
| Gene3D | 3.90.700.10 | - |
281 | 384 | 0.0 |
IPR027477 |
| Gene3D | 1.20.58.100 | - |
463 | 579 | 4.3e-34 |
- |
| SUPERFAMILY | SSF46977 | - |
483 | 643 | 7.5e-42 |
IPR037099 |
| Pfam | PF02910 | Fumarate reductase flavoprotein C-term |
492 | 643 | 8.8e-38 |
IPR015939 |
| Gene3D | 4.10.80.40 | - |
580 | 643 | 4.5e-31 |
- |
InterPro assignment
| InterPro ID | InterPro description |
|---|
| IPR003952 | Fumarate reductase/succinate dehydrogenase, FAD-binding site |
| IPR003953 | FAD-dependent oxidoreductase 2, FAD binding domain |
| IPR011281 | Succinate dehydrogenase, flavoprotein subunit |
| IPR014006 | Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
| IPR015939 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal |
| IPR027477 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily |
| IPR036188 | FAD/NAD(P)-binding domain superfamily |
| IPR037099 | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily |
Gene ontology (GO) assignment
| GO category | GO ID | GO description |
|---|
| biological process | GO:0006099 | tricarboxylic acid cycle |
| molecular function | GO:0016491 | oxidoreductase activity |
| molecular function | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
| biological process | GO:0022900 | electron transport chain |
| molecular function | GO:0050660 | flavin adenine dinucleotide binding |
| biological process | GO:0055114 | oxidation-reduction process |